Package: opticskxi 1.1.0

opticskxi: OPTICS K-Xi Density-Based Clustering

Provides a novel density-based cluster extraction method, OPTICS k-Xi, and a framework to compare k-Xi models using distance-based metrics to investigate datasets with unknown number of clusters.

Authors:Thomas Charlon [aut, cre]

opticskxi_1.1.0.tar.gz
opticskxi_1.1.0.zip(r-4.5)opticskxi_1.1.0.zip(r-4.4)opticskxi_1.1.0.zip(r-4.3)
opticskxi_1.1.0.tgz(r-4.4-any)opticskxi_1.1.0.tgz(r-4.3-any)
opticskxi_1.1.0.tar.gz(r-4.5-noble)opticskxi_1.1.0.tar.gz(r-4.4-noble)
opticskxi_1.1.0.tgz(r-4.4-emscripten)opticskxi_1.1.0.tgz(r-4.3-emscripten)
opticskxi.pdf |opticskxi.html✨
opticskxi/json (API)

# Install 'opticskxi' in R:

install.packages('opticskxi', repos = c('https://thomaschln.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://gitlab.com/thomaschln/opticskxi

Datasets:

crohn - Crohn's disease data
hla - The HLA data
m_psychwords - A dataset containing words by embeddings matrix
multishapes - A dataset containing clusters of multiple shapes

On CRAN:

17 exports 2 stars 1.01 score 28 dependencies 1 scripts 165 downloads

Last updated 3 months agofrom:f9e498f816. Checks:OK: 1 NOTE: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 12 2024
R-4.5-win	NOTE	Sep 12 2024
R-4.5-linux	NOTE	Sep 12 2024
R-4.4-win	NOTE	Sep 12 2024
R-4.4-mac	NOTE	Sep 12 2024
R-4.3-win	NOTE	Sep 12 2024
R-4.3-mac	NOTE	Sep 12 2024

Exports:%<>%%>%%$%contingency_table fortify_dimred fortify_ica fortify_pca get_best_kxi ggpairs ggplot_kxi_metrics ggplot_optics gtable_kxi_profiles nice_palette opticskxi opticskxi_pipeline print_table residuals_table

Dependencies:cli colorspace fansi farver ggplot2 glue gtable isoband labeling lattice lifecycle magrittr MASS Matrix mgcv munsell nlme pillar pkgconfig R6 RColorBrewer rlang scales tibble utf8 vctrs viridisLite withr

OPTICS K-Xi Density-Based Clustering

Rendered fromopticskxi.Rnwusingutils::Sweaveon Sep 12 2024.

Last update: 2019-07-15
Started: 2019-07-15

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Magrittr pipe-assign operator	%<>%
Magrittr pipe operator	%>%
Magrittr pipe-with operator	%$%
Contingency table	contingency_table
Crohn's disease data	crohn
Fortify a dimension reduction object	fortify_dimred
Get and fortify ICA	fortify_ica
Get and fortify PCA	fortify_pca
Get best k-Xi model	get_best_kxi
Plot multiple axes of a data frame or a fortified dimension reduction.	ggpairs
Ggplot OPTICS k-Xi metrics	ggplot_kxi_metrics
Ggplot optics	ggplot_optics
Gtable OPTICS k-Xi distance profiles	gtable_kxi_profiles
The HLA data	hla
A dataset containing words by embeddings matrix	m_psychwords
A dataset containing clusters of multiple shapes	multishapes
Nice palette	nice_palette
OPTICS k-Xi clustering algorithm	opticskxi
OPTICS k-Xi models comparison pipeline	opticskxi_pipeline
Print table	print_table
Residuals table	residuals_table